pCT - User contributions [en]

File:Trigger manager.pdf

2020-12-16T15:07:50Z

Ogr043: Ogr043 uploaded a new version of File:Trigger manager.pdf

File:Alpide data.pdf

2020-11-08T20:01:47Z

Ogr043: Ogr043 uploaded a new version of File:Alpide data.pdf

File:Global regs.pdf

2020-11-06T18:30:09Z

Ogr043: Ogr043 uploaded a new version of File:Global regs.pdf

File:PRU Address Map.pdf

2020-11-06T15:14:04Z

Ogr043: Ogr043 uploaded a new version of File:PRU Address Map.pdf

File:PRU Address Map.pdf

2020-11-06T14:06:03Z

Ogr043: Ogr043 uploaded a new version of File:PRU Address Map.pdf

File:PRU Address Map.pdf

2020-11-06T13:35:04Z

Ogr043: Ogr043 uploaded a new version of File:PRU Address Map.pdf

File:PRU Address Map.pdf

2020-11-06T12:41:48Z

Ogr043: Ogr043 uploaded a new version of File:PRU Address Map.pdf

File:PRU Address Map.pdf

2020-11-06T12:30:54Z

Ogr043: Ogr043 uploaded a new version of File:PRU Address Map.pdf

File:Bus tree.png

2020-11-06T12:06:12Z

Ogr043: Ogr043 uploaded a new version of File:Bus tree.png

File:PRU Address Map.pdf

2020-11-06T12:06:02Z

Ogr043: Ogr043 uploaded a new version of File:PRU Address Map.pdf

File:Bus tree.png

2020-11-06T11:21:17Z

Ogr043: Ogr043 uploaded a new version of File:Bus tree.png

File:Top level firmware.png

2020-11-04T13:09:46Z

Ogr043: Ogr043 uploaded a new version of File:Top level firmware.png

File:Bus tree.png

2020-11-04T13:09:34Z

Ogr043: Ogr043 uploaded a new version of File:Bus tree.png

Hardware Documentation and Howto's

2020-11-04T11:57:50Z

Ogr043: /* pRU */

== Getting Started ==

* [[Getting Started VCU118|VCU118]]
* [[Getting Started PTB|PTB]]

== Documentation ==

=== pRU ===

* [[:Media:Clock_network.png | pRU Clock Network]]
* [[:Media:PRU Address Map.pdf | pRU Address Map]]
* [[:Media:PRU Ethernet Configurations.pdf | DCS and Data Offload Ethernet Configurations]]
* [[:Media:PDTP.pdf | pCT Data Transfer Protocol]]
* [[:Media:Data format v0.2.pdf | pRU Data Format]]
* [[:Media:FpgaCalc.ods | FPGA and ALPIDE radiation calculations]]
* [[:Media:Control Interface.pdf | pRU Control Interface]] [Deprecated, only in use on PTB. Replaced with IPBus on VCU118 + all other boards in the future.]

==== pRU Registers and Bus System ====
[[File:Top level firmware.png|500px]][[File:Bus tree.png|500px]]

The pRU bus system is connecting the various modules on the FPGA to a common master, the Microblaze Subsystem.
Each of the modules is associated with a given BASE-ADDRESS specified in the [[:Media:Control Interface.pdf | pRU Control Interface Document]].
Note that several instances do exist for certain modules. E.g. there are one alpide_data instance for each ALPIDE chip connected to the pRU.
To communicate with a specific instance one needs to add an offset of 0x1000 times the instance number to the module base address.

E.g. if you want to communicate with the

* 1st instance: <ALPIDE_DATA_BASEADDR>

* 2nd instance: <ALPIDE_DATA_BASEADDR> + (0x1000 * (2-1))

* 16th instance: <ALPIDE_DATA_BASEADDR> + (0x1000 * (16-1))

===== Module Registers =====

* [[:Media:Global_regs.pdf | global_regs]]
* [[:Media:Trigger_manager.pdf | trigger_manager]]
* [[:Media:Offload.pdf | offload]]
* [[:Media:Alpide_control.pdf | alpide_control]]
* [[:Media:Alpide_data.pdf | alpide_data]]

==== PTB-specific Module Registers ====

* [[:Media:Power_control.pdf | power_control]]
* [[:Media:Ptb_regs.pdf | ptb_regs]]

=== Transition Card (TC) ===

* [[Media:TC-v1.0_schematic.pdf | TC-v1.0 Schematic]]

=== ALPIDE Chip ===

* [[Media:Alpide manual ver3.pdf | ALPIDE Manual v0.3]]

=== ALPIDE Bonding and Mounting ===

* [[:Media:Report_Feb_2019.pdf | 9-chip String Simulation - and proposed 9-chip string redesign - 2019 Feb ]]

==== Chip Cable ====

* [[:Media:2020_01_08.zip | 2020 January 8 ]]
* [[:Media:2019_05_16.zip | 2019 May 16 (ULTM)]]

==== 9 Chip String ====

* [[:Media:2019_11_05.zip | 2019 November 5 ]]

=== Production Test Box (PTB) ===

* [[:Media:PTB-v1.0_schematic.pdf | PTB-v1.0 Schematic]]
* [[:Media:PTB-v1.0_samtec.zip | PTB-v1.0 FPGA Connections]]
* [[:Media:PTB-v1.0_yamaichi.zip | PTB-v1.0 Yamaichi Connections]]

=== FPGA Mezzanine Card (FMC) ===

* [[:Media:FMC-v1.0_schematic.pdf | FMC-v1.0 Schematic]]

=== mTower ===

* [[:Media:mTower_schematic.pdf | mTower Schematic]]

File:Clock network.png

2020-11-04T11:57:32Z

Ogr043:

Hardware Documentation and Howto's

2020-09-01T10:50:06Z

Ogr043: /* pRU */

== Getting Started ==

* [[Getting Started VCU118|VCU118]]
* [[Getting Started PTB|PTB]]

== Documentation ==

=== pRU ===

* [[:Media:Control Interface.pdf | pRU Control Interface]] [Deprecated, only in use on PTB. Replaced with IPBus on VCU118 + all other boards in the future.]
* [[:Media:PRU Address Map.pdf | pRU Address Map]]
* [[:Media:PRU Ethernet Configurations.pdf | DCS and Data Offload Ethernet Configurations]]
* [[:Media:PDTP.pdf | pCT Data Transfer Protocol]]
* [[:Media:Data format v0.2.pdf | pRU Data Format]]
* [[:Media:FpgaCalc.ods | FPGA and ALPIDE radiation calculations]]

==== pRU Registers and Bus System ====
[[File:Top level firmware.png|500px]][[File:Bus tree.png|500px]]

The pRU bus system is connecting the various modules on the FPGA to a common master, the Microblaze Subsystem.
Each of the modules is associated with a given BASE-ADDRESS specified in the [[:Media:Control Interface.pdf | pRU Control Interface Document]].
Note that several instances do exist for certain modules. E.g. there are one alpide_data instance for each ALPIDE chip connected to the pRU.
To communicate with a specific instance one needs to add an offset of 0x1000 times the instance number to the module base address.

E.g. if you want to communicate with the

* 1st instance: <ALPIDE_DATA_BASEADDR>

* 2nd instance: <ALPIDE_DATA_BASEADDR> + (0x1000 * (2-1))

* 16th instance: <ALPIDE_DATA_BASEADDR> + (0x1000 * (16-1))

===== Module Registers =====

* [[:Media:Global_regs.pdf | global_regs]]
* [[:Media:Trigger_manager.pdf | trigger_manager]]
* [[:Media:Offload.pdf | offload]]
* [[:Media:Alpide_control.pdf | alpide_control]]
* [[:Media:Alpide_data.pdf | alpide_data]]

==== PTB-specific Module Registers ====

* [[:Media:Power_control.pdf | power_control]]
* [[:Media:Ptb_regs.pdf | ptb_regs]]

=== Transition Card (TC) ===

* [[Media:TC-v1.0_schematic.pdf | TC-v1.0 Schematic]]

=== ALPIDE Chip ===

* [[Media:Alpide manual ver3.pdf | ALPIDE Manual v0.3]]

=== ALPIDE Bonding and Mounting ===

* [[:Media:Report_Feb_2019.pdf | 9-chip String Simulation - and proposed 9-chip string redesign - 2019 Feb ]]

==== Chip Cable ====

* [[:Media:2020_01_08.zip | 2020 January 8 ]]
* [[:Media:2019_05_16.zip | 2019 May 16 (ULTM)]]

==== 9 Chip String ====

* [[:Media:2019_11_05.zip | 2019 November 5 ]]

=== Production Test Box (PTB) ===

* [[:Media:PTB-v1.0_schematic.pdf | PTB-v1.0 Schematic]]
* [[:Media:PTB-v1.0_samtec.zip | PTB-v1.0 FPGA Connections]]
* [[:Media:PTB-v1.0_yamaichi.zip | PTB-v1.0 Yamaichi Connections]]

=== FPGA Mezzanine Card (FMC) ===

* [[:Media:FMC-v1.0_schematic.pdf | FMC-v1.0 Schematic]]

=== mTower ===

* [[:Media:mTower_schematic.pdf | mTower Schematic]]

File:PRU Ethernet Configurations.pdf

2020-09-01T10:49:30Z

Ogr043: Ogr043 uploaded a new version of File:PRU Ethernet Configurations.pdf

Hardware Documentation and Howto's

2020-06-23T12:23:02Z

Ogr043: /* Documentation */

== Getting Started ==

* [[Getting Started VCU118|VCU118]]
* [[Getting Started PTB|PTB]]

== Documentation ==

=== pRU ===

* [[:Media:Control Interface.pdf | pRU Control Interface]] [Deprecated, only in use on PTB. Replaced with IPBus on VCU118 + all other boards in the future.]
* [[:Media:PRU Address Map.pdf | pRU Address Map]]
* [[:Media:PRU Ethernet Configurations.pdf | pRU Ethernet Configurations]]
* [[:Media:PDTP.pdf | pCT Data Transfer Protocol]]
* [[:Media:Data format v0.2.pdf | pRU Data Format]]
* [[:Media:FpgaCalc.ods | FPGA and ALPIDE radiation calculations]]

==== pRU Registers and Bus System ====
[[File:Top level firmware.png|500px]][[File:Bus tree.png|500px]]

The pRU bus system is connecting the various modules on the FPGA to a common master, the Microblaze Subsystem.
Each of the modules is associated with a given BASE-ADDRESS specified in the [[:Media:Control Interface.pdf | pRU Control Interface Document]].
Note that several instances do exist for certain modules. E.g. there are one alpide_data instance for each ALPIDE chip connected to the pRU.
To communicate with a specific instance one needs to add an offset of 0x1000 times the instance number to the module base address.

E.g. if you want to communicate with the

* 1st instance: <ALPIDE_DATA_BASEADDR>

* 2nd instance: <ALPIDE_DATA_BASEADDR> + (0x1000 * (2-1))

* 16th instance: <ALPIDE_DATA_BASEADDR> + (0x1000 * (16-1))

===== Module Registers =====

* [[:Media:Global_regs.pdf | global_regs]]
* [[:Media:Trigger_manager.pdf | trigger_manager]]
* [[:Media:Offload.pdf | offload]]
* [[:Media:Alpide_control.pdf | alpide_control]]
* [[:Media:Alpide_data.pdf | alpide_data]]

==== PTB-specific Module Registers ====

* [[:Media:Power_control.pdf | power_control]]
* [[:Media:Ptb_regs.pdf | ptb_regs]]

=== Transition Card (TC) ===

* [[Media:TC-v1.0_schematic.pdf | TC-v1.0 Schematic]]

=== ALPIDE Chip ===

* [[Media:Alpide manual ver3.pdf | ALPIDE Manual v0.3]]

=== ALPIDE Bonding and Mounting ===

* [[:Media:Report_Feb_2019.pdf | 9-chip String Simulation - and proposed 9-chip string redesign - 2019 Feb ]]

==== Chip Cable ====

* [[:Media:2020_01_08.zip | 2020 January 8 ]]
* [[:Media:2019_05_16.zip | 2019 May 16 (ULTM)]]

==== 9 Chip String ====

* [[:Media:2019_11_05.zip | 2019 November 5 ]]

=== Production Test Box (PTB) ===

* [[:Media:PTB-v1.0_schematic.pdf | PTB-v1.0 Schematic]]
* [[:Media:PTB-v1.0_samtec.zip | PTB-v1.0 FPGA Connections]]
* [[:Media:PTB-v1.0_yamaichi.zip | PTB-v1.0 Yamaichi Connections]]

=== FPGA Mezzanine Card (FMC) ===

* [[:Media:FMC-v1.0_schematic.pdf | FMC-v1.0 Schematic]]

=== mTower ===

* [[:Media:mTower_schematic.pdf | mTower Schematic]]

Hardware Documentation and Howto's

2020-05-29T14:26:37Z

Ogr043: /* Documentation */

== Getting Started ==

* [[Getting Started VCU118|VCU118]]
* [[Getting Started PTB|PTB]]

== Documentation ==

=== pRU ===

* [[:Media:Control Interface.pdf | pRU Control Interface]]
* [[:Media:PRU Address Map.pdf | pRU Address Map]]
* [[:Media:PRU Ethernet Configurations.pdf | pRU Ethernet Configurations]]
* [[:Media:PDTP.pdf | pCT Data Transfer Protocol]]
* [[:Media:Data format v0.2.pdf | pRU Data Format]]
* [[:Media:FpgaCalc.ods | FPGA and ALPIDE radiation calculations]]

==== pRU Registers and Bus System ====
[[File:Top level firmware.png|500px]][[File:Bus tree.png|500px]]

The pRU bus system is connecting the various modules on the FPGA to a common master, the Microblaze Subsystem.
Each of the modules is associated with a given BASE-ADDRESS specified in the [[:Media:Control Interface.pdf | pRU Control Interface Document]].
Note that several instances do exist for certain modules. E.g. there are one alpide_data instance for each ALPIDE chip connected to the pRU.
To communicate with a specific instance one needs to add an offset of 0x1000 times the instance number to the module base address.

E.g. if you want to communicate with the

* 1st instance: <ALPIDE_DATA_BASEADDR>

* 2nd instance: <ALPIDE_DATA_BASEADDR> + (0x1000 * (2-1))

* 16th instance: <ALPIDE_DATA_BASEADDR> + (0x1000 * (16-1))

===== Module Registers =====

* [[:Media:Global_regs.pdf | global_regs]]
* [[:Media:Trigger_manager.pdf | trigger_manager]]
* [[:Media:Offload.pdf | offload]]
* [[:Media:Alpide_control.pdf | alpide_control]]
* [[:Media:Alpide_data.pdf | alpide_data]]

==== PTB-specific Module Registers ====

* [[:Media:Power_control.pdf | power_control]]
* [[:Media:Ptb_regs.pdf | ptb_regs]]

=== Transition Card (TC) ===

* [[Media:TC-v1.0_schematic.pdf | TC-v1.0 Schematic]]

=== ALPIDE Chip ===

* [[Media:Alpide manual ver3.pdf | ALPIDE Manual v0.3]]

=== ALPIDE Bonding and Mounting ===

* [[:Media:Report_Feb_2019.pdf | 9-chip String Simulation - and proposed 9-chip string redesign - 2019 Feb ]]

==== Chip Cable ====

* [[:Media:2020_01_08.zip | 2020 January 8 ]]
* [[:Media:2019_05_16.zip | 2019 May 16 (ULTM)]]

==== 9 Chip String ====

* [[:Media:2019_11_05.zip | 2019 November 5 ]]

=== Production Test Box (PTB) ===

* [[:Media:PTB-v1.0_schematic.pdf | PTB-v1.0 Schematic]]
* [[:Media:PTB-v1.0_samtec.zip | PTB-v1.0 FPGA Connections]]
* [[:Media:PTB-v1.0_yamaichi.zip | PTB-v1.0 Yamaichi Connections]]

=== FPGA Mezzanine Card (FMC) ===

* [[:Media:FMC-v1.0_schematic.pdf | FMC-v1.0 Schematic]]

=== mTower ===

* [[:Media:mTower_schematic.pdf | mTower Schematic]]

File:FpgaCalc.ods

2020-05-29T14:25:59Z

Ogr043:

ALPIDE Documentation and Papers

2020-05-14T12:44:07Z

Ogr043:

* [[Media:Alpide manual ver3.pdf | ALPIDE Manual v0.3]]

* [https://iopscience.iop.org/article/10.1088/0954-3899/41/8/087002 Technical Design Report for the Upgrade of the ALICE Inner Tracking System]

== Presentations ==

* [[:Media:Zherebchevsky_ALPIDE_at_cryogenic_temperatures_october_2017.pdf | Investigations of the irradiated ALPIDE at cryogenic temperatures]]

* [https://indico.particle.mephi.ru/event/22/contributions/1154/attachments/637/712/ICPPA2018_Nesterov_Dmitrii.pdf Study of noise characteristics of irradiated pixel detectors]

* [[:Media:WP5_20171004.pdf | Study of radiation hardness of ALPIDE chips using 30 MeV proton beam]]

== Papers ==

* [https://www.sciencedirect.com/science/article/pii/S0168900215011122 ALPIDE, the Monolithic Active Pixel Sensor for the ALICE ITS upgrade]

== Thesis ==

* [http://cds.cern.ch/record/2151986/files/CERN-THESIS-2016-033.pdf?version=1 Studies for the ALICE Inner Tracking System Upgrade]

ALPIDE Documentation and Papers

2020-05-14T12:43:58Z

Ogr043:

* [[Media:Alpide manual ver3.pdf | ALPIDE Manual v0.3]]

* [https://iopscience.iop.org/article/10.1088/0954-3899/41/8/087002 Technical Design Report for the Upgrade of the ALICE Inner Tracking System]

== Presentations ==

* [[:Media:Zherebchevsky_ALPIDE_at_cryogenic_temperatures_october_2017.pdf | Investigations of the irradiated ALPIDE at cryogenic temperatures]]

* [https://indico.particle.mephi.ru/event/22/contributions/1154/attachments/637/712/ICPPA2018_Nesterov_Dmitrii.pdf Study of noise characteristics of irradiated pixel detectors]

* [[:Media:WP5_20171004.pdf | Study of radiation hardness of ALPIDE chips using 30 MeV proton beam]]

== Papers ==

[https://www.sciencedirect.com/science/article/pii/S0168900215011122 ALPIDE, the Monolithic Active Pixel Sensor for the ALICE ITS upgrade]

== Thesis ==

* [http://cds.cern.ch/record/2151986/files/CERN-THESIS-2016-033.pdf?version=1 Studies for the ALICE Inner Tracking System Upgrade]

ALPIDE Documentation and Papers

2020-05-14T12:43:15Z

Ogr043:

* [[Media:Alpide manual ver3.pdf | ALPIDE Manual v0.3]]

* [https://iopscience.iop.org/article/10.1088/0954-3899/41/8/087002 Technical Design Report for the Upgrade of the ALICE Inner Tracking System]

== Presentations ==

* [[:Media:Zherebchevsky_ALPIDE_at_cryogenic_temperatures_october_2017.pdf | Investigations of the irradiated ALPIDE at cryogenic temperatures]]

* [https://indico.particle.mephi.ru/event/22/contributions/1154/attachments/637/712/ICPPA2018_Nesterov_Dmitrii.pdf Study of noise characteristics of irradiated pixel detectors]

* [[:Media:WP5_20171004.pdf | Study of radiation hardness of ALPIDE chips using 30 MeV proton beam]]

== Papers ==

== Thesis ==

* [http://cds.cern.ch/record/2151986/files/CERN-THESIS-2016-033.pdf?version=1 Studies for the ALICE Inner Tracking System Upgrade]

ALPIDE Documentation and Papers

2020-05-14T12:42:54Z

Ogr043:

* [[Media:Alpide manual ver3.pdf | ALPIDE Manual v0.3]]

* [https://iopscience.iop.org/article/10.1088/0954-3899/41/8/087002 Technical Design Report for the Upgrade of the ALICE Inner Tracking System]

== Presentations ==

* [[:Media:Zherebchevsky_ALPIDE_at_cryogenic_temperatures_october_2017.pdf | Investigations of the irradiated ALPIDE at cryogenic temperatures]]

* [https://indico.particle.mephi.ru/event/22/contributions/1154/attachments/637/712/ICPPA2018_Nesterov_Dmitrii.pdf Study of noise characteristics of irradiated pixel detectors]

* [[:Media:WP5_20171004.pdf Study of radiation hardness of ALPIDE chips using 30 MeV proton beam]]

== Papers ==

== Thesis ==

* [http://cds.cern.ch/record/2151986/files/CERN-THESIS-2016-033.pdf?version=1 Studies for the ALICE Inner Tracking System Upgrade]

File:WP5 20171004.pdf

2020-05-14T12:42:12Z

Ogr043:

ALPIDE Documentation and Papers

2020-05-14T12:39:36Z

Ogr043:

* [[Media:Alpide manual ver3.pdf | ALPIDE Manual v0.3]]

* [https://iopscience.iop.org/article/10.1088/0954-3899/41/8/087002 Technical Design Report for the Upgrade of the ALICE Inner Tracking System]

== Presentations ==

* [[:Media:Zherebchevsky_ALPIDE_at_cryogenic_temperatures_october_2017.pdf | Investigations of the irradiated ALPIDE at cryogenic temperatures]]

* [https://indico.particle.mephi.ru/event/22/contributions/1154/attachments/637/712/ICPPA2018_Nesterov_Dmitrii.pdf Study of noise characteristics of irradiated pixel detectors]

== Papers ==

== Thesis ==

[http://cds.cern.ch/record/2151986/files/CERN-THESIS-2016-033.pdf?version=1 Studies for the ALICE Inner Tracking System Upgrade]

ALPIDE Documentation and Papers

2020-05-14T12:38:19Z

Ogr043:

* [[Media:Alpide manual ver3.pdf | ALPIDE Manual v0.3]]

[https://iopscience.iop.org/article/10.1088/0954-3899/41/8/087002 Technical Design Report for the Upgrade of the ALICE Inner Tracking System]

== Presentations ==

* [[:Media:Zherebchevsky_ALPIDE_at_cryogenic_temperatures_october_2017.pdf | Investigations of the irradiated ALPIDE at cryogenic temperatures]]

* [https://indico.particle.mephi.ru/event/22/contributions/1154/attachments/637/712/ICPPA2018_Nesterov_Dmitrii.pdf Study of noise characteristics of irradiated pixel detectors]

== Papers ==

ALPIDE Documentation and Papers

2020-05-14T12:37:13Z

Ogr043: /* Presentations */

* [[Media:Alpide manual ver3.pdf | ALPIDE Manual v0.3]]

== Presentations ==

* [[:Media:Zherebchevsky_ALPIDE_at_cryogenic_temperatures_october_2017.pdf | Investigations of the irradiated ALPIDE at cryogenic temperatures]]

* [https://indico.particle.mephi.ru/event/22/contributions/1154/attachments/637/712/ICPPA2018_Nesterov_Dmitrii.pdf Study of noise characteristics of irradiated pixel detectors]

== Papers ==

ALPIDE Documentation and Papers

2020-05-14T12:37:00Z

Ogr043: /* Presentations */

* [[Media:Alpide manual ver3.pdf | ALPIDE Manual v0.3]]

== Presentations ==

* [[:Media:Zherebchevsky_ALPIDE_at_cryogenic_temperatures_october_2017.pdf | Investigations of the irradiated ALPIDE at cryogenic temperatures]]

[https://indico.particle.mephi.ru/event/22/contributions/1154/attachments/637/712/ICPPA2018_Nesterov_Dmitrii.pdf Study of noise characteristics of irradiated pixel detectors]

== Papers ==

ALPIDE Documentation and Papers

2020-05-14T12:35:32Z

Ogr043:

ALPIDE Documentation and Papers

2020-05-14T12:35:18Z

Ogr043:

ALPIDE Documentation and Papers

2020-05-14T12:08:38Z

Ogr043:

== Presentations ==

* [[:Media:Zherebchevsky_ALPIDE_at_cryogenic_temperatures_october_2017.pdf | Investigations of the irradiated ALPIDE at cryogenic
temperatures]]

ALPIDE Documentation and Papers

2020-05-14T12:08:19Z

Ogr043: Created page with " * Investigations of the irradiated ALPIDE at cryogenic temperatures"

* [[:Media:Zherebchevsky_ALPIDE_at_cryogenic_temperatures_october_2017.pdf | Investigations of the irradiated ALPIDE at cryogenic
temperatures]]

Main Page

2020-05-14T12:07:26Z

Ogr043:

'''Wiki for the proton CT project'''

== Documentation and Howto's ==

* [[Documentation|General Documentation]] on how to install and use the involved software packages, the development workflow, etc.

* [[Hardware Documentation and Howto's]]

* [[Control & Readout Software Documentation and Howto's]]

* [[ALPIDE Documentation and Papers]]

== [[Publications]] ==
List of publications from the project.

==== Workpackage Reports ====
* [[Media:pCT-WP1-1-Rev2 design recommendations.pdf | pCT-WP1-01-Rev2 Detector design specifications]] (Rev2: Added carrier board thickness recommendations) --- See also submitted article on design optimization
* [[:File:pCT-WP1-02-Rev3 (Radiation environment and electronics).pdf | pCT-WP1-02-Rev3 Radiation environment and placement of electronics]] (Rev2: Updated results and assumptions, Rev3: Updated with 1-10cm results) (Please feel free to contact [mailto:jars@hvl.no Jarle Rambo Sølie] if there are any questions regarding the contents of this document.

==== Theses ====
* Daniel Aadnevik - MSc - 2014 - Extremely high-granularity digital tracking calorimeter for the detection of scattered protons in pCT
* [http://bora.uib.no/bitstream/handle/1956/10412/135279255.pdf?sequence=1&isAllowed=y Kristian Austreim - MSc - 2015 - Proton computed tomography readout testing and detector design]
* [http://bora.uib.no/bitstream/handle/1956/16041/thesis_final.pdf?sequence=1&isAllowed=y Ola Grøttvik - MSc - 2017 - Design of High-Speed Digital Readout System for Use in Proton Computed Tomography]
* [http://bora.uib.no/bitstream/handle/1956/16758/PCT_readout_testing_and_detector_HSchaug.pdf?sequence=1&isAllowed=y Håkon Schaug - MSc - 2017 - Proton Beam Test Of A High Granularity Calorimeter For Proton Computed Tomography]
* [https://brage.bibsys.no/xmlui/bitstream/handle/11250/2434108/16246_FULLTEXT.pdf?sequence=1&isAllowed=y Even Hansen - MSc - 2017 - Charge Diffusion Modelling for a Monolithic Active Pixel Sensor Detector with Application to Proton CT]
* [http://bora.uib.no/handle/1956/17757 Helge Pettersen - PhD - 2018 - A Digital Tracking Calorimeter for Proton Computed Tomography]
* [http://bora.uib.no/handle/1956/18748 Simon Kristian Huiberts - MSc - 2018 - Characterization of the ALPIDE chip using He ions (Data from Australian Micro beam, cluster size characteristics). ]
* [http://bora.uib.no/handle/1956/18058 Viljar Nilsen Ekeland - MSc - 2018 - Characterization of the ALPIDE chip using protons (Data from Oslo beam test, cluster size and LET correlation with different bias voltages).]
* [http://bora.uib.no/handle/1956/18057 Susmita Afroz - MSc - 2018 - Noise and Cluster Size Studies of ALPIDE-CMOS Pixel Sensor for pCT]
* Silje Grimstad - MSc (HVL) - 2019 - ALPIDE Cluster simulations (Building database of cluster characteristics, simulation of clusters using said database. Position and cluster separation algorithms).
* Alba Garcia Santos - MSc (Utrecht) - 2019 - Improvements of track reconstruction algorithms in pixel-based pCT calorimeters
* Aleksei Kuleshov - MSc - 2019 - Proton CT monitoring and ALPIDE control (MQTT protocol server, System workflow, GUI implementation).

==== Journal Articles ====
* Pettersen, H.E.S., J. Alme, A. van den Brink, M. Chaar, D. Fehlker, I. Meric, O.H. Odland, et al. Proton Tracking in a High-Granularity Digital Tracking Calorimeter for Proton CT Purposes. Nuclear Instruments and Methods in Physics Research A 860C, 51–61. doi:10.1016/j.nima.2017.02.007.
** Published manuscript: [[Media: 1-s2.0-S0168900217301882-main.pdf | PDF]]
** Elsevier link: [http://www.sciencedirect.com/science/article/pii/S0168900217301882 doi:10.1016/j.nima.2017.02.007]
** arXiv link: [https://arxiv.org/abs/1611.02031 arXiv:1611.02031]

* Pettersen, H.E.S., Chaar, M., Meric, I., Odland, O.H., Sølie, J., Röhrich, D. Accuracy of parameterized proton range models; a comparison. Radiation Physics and Chemistry, 144 (C): 295-297 (2018). doi:10.1016/j.radphyschem.2017.08.02
** Published manuscript: [[Media: Comparison of different calculation methods of proton ranges.pdf | PDF]]
** Elsevier link: [http://www.sciencedirect.com/science/article/pii/S0969806X17303869?via%3Dihub 10.1016/j.radphyschem.2017.08.028]
** arXiv link: [https://arxiv.org/abs/1704.08854 arXiv:1704.08854]

* Pettersen, H. E. S., and D. Röhrich. 2017. Kreftbehandling Med Protonterapi Og Proton CT. Fra Fysikkens Verden, December 2017.
** Published article: [[Media: FFV-proton-CT-ensidig.pdf | PDF]]
** [http://norskfysisk.no/filer/FFV/2017/FFV-2017-4.pdf Magazine at norskfysisk.no]

==== In review ====
* Pettersen, H.E.S., Meric, I., Odland, O.H., Shafiee, H., Sølie, J., Röhrich, D. Proton Tracking Algorithm for Pixel Based Range Telescopes for Proton Computed Tomography. Revision submitted to Web of Conferences after the "Connecting the Dots" conference.
** Revised manuscript: [[Media: detector-proton-tracking.pdf | PDF]]

* Pettersen, Helge Egil Seime, Lennart Volz, Jarle Sølie, Dieter Rohrich, and Joao Seco. A Linear Projection Model to Estimate a Proton’s Position in a Pencil Beam For Single Sided Proton Imaging,. Submitted to Physics in Medicine and Biology.
** Submitted manuscript: [[Media: Authors manuscript.pdf | PDF]]

* Pettersen, Helge Egil Seime, Johan Alme, Gergely Gabor Barnafoldi, Alba Garcıa-Santos, Ola Grøttvik, Håvard Helstrup, Kristin Fanebust Hetland, Ilker Meric, Odd Harald Odland, Gabor Papp, Thomas Peitzmann, Dieter Röhrich, Joao Seco, Hesam Shafiee, Eivind Vågslid Skjæveland, Ganesh Tambave, Kjetil Ullaland, Monika Varga-Kofarago, Lennart Volz, Boris Wagner and Shiming Yang. Design Optimization of a Pixel Based Range Telescope for Proton Computed Tomography. Submitted to Physica Medica Special Issue: Advances in Geant4 for medicine.
** Submitted manuscript: [[Media: Pettersen et al. - Design Optimization of a Pixel Based Range Telesco.pdf| PDF]]

==== Work in Progress ====
* J. Sølie, H. E. S. Pettersen, I. Meric, O. H. Odland, H. Helstrup and D. Röhrich: A comparison of longitudinal and lateral range for protons traversing complex media using GATE, MCNP6 and FLUKA Monte Carlo simulations.

== [[Meetings]] ==
Notes and slides from the project meetings

== [[Workshops]] ==
Slides from the project [[Workshops | workshops]]

== [[Workpackages]] ==
Sections for the different work packages

== [[People]] ==
Contact info of involved people

== [[Links]] ==
Link collection of topics regarding the project

== Getting started ==
* Note: ASK is a placeholder that marks questions
* Note: Search function is not ideal. It doesn't find all occurences of the search term, e.g. aries finds libraries but not aries.bccs

* Consult the [//meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.
* [//www.mediawiki.org/wiki/Manual:Configuration_settings Configuration settings list]
* [//www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ]
* [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]

Building Boost

2020-03-28T11:16:42Z

Ogr043:

Version used: Boost-v1.7 with Python3 support

<syntaxhighlight lang="bash">
$ wget https://netix.dl.sourceforge.net/project/boost/boost/1.70.0/boost_1_70_0.tar.gz

$ tar xvf boost_1_70_0.tar.gz

$ cd boost_1_70_0/

$ ./bootstrap.sh --prefix=/opt/boost-v1.7-python3 --with-python=/usr/bin/python3

$ sudo ./b2 install --prefix=/opt/boost-v1.7-python3 --with=all -j4
</syntaxhighlight>

Remember to add Boost details to your environment, e.g. /etc/bashrc:

<syntaxhighlight lang="bash">
export LD_LIBRARY_PATH=/opt/boost-v1.7-python3/lib:$LD_LIBRARY_PATH

export CPLUS_INCLUDE_PATH=/opt/boost-v1.7-python3/include:$CPLUS_INCLUDE_PATH

export PYTHONPATH=/opt/boost-v1.7-python3/lib:$PYTHONPATH
</syntaxhighlight>

Building ROOT

2020-02-18T08:21:40Z

Ogr043:

[[Main Page]] -> [[Control & Readout Software Documentation and Howto's]] -> [[Building ROOT]]

In the pCT project we need to use a version of ROOT which is compiled with c++17 in order to build packages with ROOT dependencies with c++17 standard. .

ROOT implements a custom adaptor to <code>std::string_view</code> if not compiled with c++17 and this conflicts with the real one if a packages uses c++17 standard and ROOT libraries/includes.

<syntaxhighlight lang="bash">
sudo yum install git cmake gcc-c++ gcc binutils \
libX11-devel libXpm-devel libXft-devel libXext-devel \
gcc-gfortran openssl-devel pcre-devel \
mesa-libGL-devel mesa-libGLU-devel glew-devel ftgl-devel mysql-devel \
fftw-devel cfitsio-devel graphviz-devel \
avahi-compat-libdns_sd-devel libldap-dev python-devel \
libxml2-devel gsl-static gsl-devel \
libAfterImage libAfterImage-devel

sudo python3 -m pip install numpy

# clone the repository and select version
git clone http://github.com/root-project/root.git
cd root
git checkout v6-20-00-rc1

# choose a build directory
mkdir build_root; cd build_root

scl enable devtoolset-8 bash

# configure: choose install target, on the lab machine we need to disable asimage for some reason
# the important flag is the C++ standard
cmake3 -DCMAKE_INSTALL_PREFIX=/opt/root -DCMAKE_CXX_STANDARD=17 -DPYTHON_EXECUTABLE=/usr/bin/python3 ../

#build and install
sudo cmake3 --build . --target install -- -j4

</syntaxhighlight>

Remember to add root details to your environment, e.g. /etc/bashrc:
(LD_LIBRARY_PATH and PYTHONPATH must BOTH be set for pyroot to work)

<syntaxhighlight lang="bash">

export ROOTSYS=/opt/root
source $ROOTSYS/bin/thisroot.sh

export LD_LIBRARY_PATH=/opt/root/lib:$LD_LIBRARY_PATH

export PYTHONPATH=/opt/root/lib:$PYTHONPATH

</syntaxhighlight>

Building ROOT

2020-02-17T18:04:58Z

Ogr043:

[[Main Page]] -> [[Control & Readout Software Documentation and Howto's]] -> [[Building ROOT]]

In the pCT project we need to use a version of ROOT which is compiled with c++17 in order to build packages with ROOT dependencies with c++17 standard. .

ROOT implements a custom adaptor to <code>std::string_view</code> if not compiled with c++17 and this conflicts with the real one if a packages uses c++17 standard and ROOT libraries/includes.

<syntaxhighlight lang="bash">
sudo yum install git cmake gcc-c++ gcc binutils \
libX11-devel libXpm-devel libXft-devel libXext-devel \
gcc-gfortran openssl-devel pcre-devel \
mesa-libGL-devel mesa-libGLU-devel glew-devel ftgl-devel mysql-devel \
fftw-devel cfitsio-devel graphviz-devel \
avahi-compat-libdns_sd-devel libldap-dev python-devel \
libxml2-devel gsl-static gsl-devel \
libAfterImage libAfterImage-devel

sudo python3 -m pip install numpy

# clone the repository
git clone http://github.com/root-project/root.git
cd root
git checkout v6-20-00-rc1

# choose a build directory
mkdir build_root; cd build_root

scl enable devtoolset-8 bash

# configure: choose install target, on the lab machine we need to disable asimage for some reason
# the important flag is the C++ standard
cmake3 -DCMAKE_INSTALL_PREFIX=/opt/root -DCMAKE_CXX_STANDARD=17 -DPYTHON_EXECUTABLE=/usr/bin/python3 ../

#build and install
sudo cmake3 --build . --target install -- -j4

</syntaxhighlight>

Building ROOT

2020-02-17T17:26:43Z

Ogr043:

[[Main Page]] -> [[Control & Readout Software Documentation and Howto's]] -> [[Building ROOT]]

In the pCT project we need to use a version of ROOT which is compiled with c++17 in order to build packages with ROOT dependencies with c++17 standard. .

ROOT implements a custom adaptor to <code>std::string_view</code> if not compiled with c++17 and this conflicts with the real one if a packages uses c++17 standard and ROOT libraries/includes.

<syntaxhighlight lang="bash">
sudo yum install git cmake gcc-c++ gcc binutils \
libX11-devel libXpm-devel libXft-devel libXext-devel \
gcc-gfortran openssl-devel pcre-devel \
mesa-libGL-devel mesa-libGLU-devel glew-devel ftgl-devel mysql-devel \
fftw-devel cfitsio-devel graphviz-devel \
avahi-compat-libdns_sd-devel libldap-dev python-devel \
libxml2-devel gsl-static gsl-devel \
libAfterImage libAfterImage-devel

sudo python3 -m pip install numpy

# clone the repository
git clone http://github.com/root-project/root.git
cd root

# choose a build directory
mkdir build_root; cd build_root

scl enable devtoolset-8 bash

# configure: choose install target, on the lab machine we need to disable asimage for some reason
# the important flag is the C++ standard
cmake3 -DCMAKE_INSTALL_PREFIX=/opt/root -DCMAKE_CXX_STANDARD=17 -DPYTHON_EXECUTABLE=/usr/bin/python3 ../

#build and install
sudo cmake3 --build . --target install -- -j4

</syntaxhighlight>

Building ROOT

2020-02-17T14:08:29Z

Ogr043:

[[Main Page]] -> [[Control & Readout Software Documentation and Howto's]] -> [[Building ROOT]]

In the pCT project we need to use a version of ROOT which is compiled with c++17 in order to build packages with ROOT dependencies with c++17 standard. .

ROOT implements a custom adaptor to <code>std::string_view</code> if not compiled with c++17 and this conflicts with the real one if a packages uses c++17 standard and ROOT libraries/includes.

<syntaxhighlight lang="bash">
sudo yum install git cmake gcc-c++ gcc binutils \
libX11-devel libXpm-devel libXft-devel libXext-devel \
gcc-gfortran openssl-devel pcre-devel \
mesa-libGL-devel mesa-libGLU-devel glew-devel ftgl-devel mysql-devel \
fftw-devel cfitsio-devel graphviz-devel \
avahi-compat-libdns_sd-devel libldap-dev python-devel \
libxml2-devel gsl-static gsl-devel \
libAfterImage libAfterImage-devel

sudo python3 -m pip install numpy

# clone the repository
git clone http://github.com/root-project/root.git

# get version
cd root
git checkout v6-18-04

# choose a build directory
mkdir build_root; cd build_root

scl enable devtoolset-8 bash

# configure: choose install target, on the lab machine we need to disable asimage for some reason
# the important flag is the C++ standard
cmake3 -DCMAKE_INSTALL_PREFIX=/opt/root -DCMAKE_CXX_STANDARD=17 -DPYTHON_EXECUTABLE=/usr/bin/python3 ../

#build and install
cmake3 --build . --target VDT
sudo cmake3 --build . --target install -- -j4

</syntaxhighlight>

Building ROOT

2020-02-17T14:07:51Z

Ogr043:

[[Main Page]] -> [[Control & Readout Software Documentation and Howto's]] -> [[Building ROOT]]

In the pCT project we need to use a version of ROOT which is compiled with c++17 in order to build packages with ROOT dependencies with c++17 standard. .

ROOT implements a custom adaptor to <code>std::string_view</code> if not compiled with c++17 and this conflicts with the real one if a packages uses c++17 standard and ROOT libraries/includes.

<syntaxhighlight lang="bash">
sudo yum install git cmake gcc-c++ gcc binutils \
libX11-devel libXpm-devel libXft-devel libXext-devel \
gcc-gfortran openssl-devel pcre-devel \
mesa-libGL-devel mesa-libGLU-devel glew-devel ftgl-devel mysql-devel \
fftw-devel cfitsio-devel graphviz-devel \
avahi-compat-libdns_sd-devel libldap-dev python-devel \
libxml2-devel gsl-static gsl-devel \
libAfterImage libAfterImage-devel

sudo python3 -m pip install numpy

# clone the repository
git clone http://github.com/root-project/root.git

# get version
cd root-project
git checkout v6-18-04

# choose a build directory
mkdir build_root; cd build_root

scl enable devtoolset-8 bash

# configure: choose install target, on the lab machine we need to disable asimage for some reason
# the important flag is the C++ standard
cmake3 -DCMAKE_INSTALL_PREFIX=/opt/root -DCMAKE_CXX_STANDARD=17 -DPYTHON_EXECUTABLE=/usr/bin/python3 ../

#build and install
cmake3 --build . --target VDT
sudo cmake3 --build . --target install -- -j4

</syntaxhighlight>

Building ROOT

2020-02-17T14:04:18Z

Ogr043:

[[Main Page]] -> [[Control & Readout Software Documentation and Howto's]] -> [[Building ROOT]]

In the pCT project we need to use a version of ROOT which is compiled with c++17 in order to build packages with ROOT dependencies with c++17 standard. .

ROOT implements a custom adaptor to <code>std::string_view</code> if not compiled with c++17 and this conflicts with the real one if a packages uses c++17 standard and ROOT libraries/includes.

<syntaxhighlight lang="bash">
sudo yum install git cmake gcc-c++ gcc binutils \
libX11-devel libXpm-devel libXft-devel libXext-devel \
gcc-gfortran openssl-devel pcre-devel \
mesa-libGL-devel mesa-libGLU-devel glew-devel ftgl-devel mysql-devel \
fftw-devel cfitsio-devel graphviz-devel \
avahi-compat-libdns_sd-devel libldap-dev python-devel \
libxml2-devel gsl-static gsl-devel \
libAfterImage libAfterImage-devel

sudo python3 -m pip install numpy

# clone the repository
git clone http://github.com/root-project/root.git

# choose a build directory
mkdir build_root; cd build_root

scl enable devtoolset-8 bash

# configure: choose install target, on the lab machine we need to disable asimage for some reason
# the important flag is the C++ standard
cmake3 -DCMAKE_INSTALL_PREFIX=/opt/root -DCMAKE_CXX_STANDARD=17 -DPYTHON_EXECUTABLE=/usr/bin/python3 ../

#build and install
cmake3 --build . --target VDT
sudo cmake3 --build . --target install -- -j4

</syntaxhighlight>

Building ROOT

2020-02-17T12:43:26Z

Ogr043:

[[Main Page]] -> [[Control & Readout Software Documentation and Howto's]] -> [[Building ROOT]]

In the pCT project we need to use a version of ROOT which is compiled with c++17 in order to build packages with ROOT dependencies with c++17 standard. .

ROOT implements a custom adaptor to <code>std::string_view</code> if not compiled with c++17 and this conflicts with the real one if a packages uses c++17 standard and ROOT libraries/includes.

<syntaxhighlight lang="bash">
sudo yum install git cmake gcc-c++ gcc binutils \
libX11-devel libXpm-devel libXft-devel libXext-devel \
gcc-gfortran openssl-devel pcre-devel \
mesa-libGL-devel mesa-libGLU-devel glew-devel ftgl-devel mysql-devel \
fftw-devel cfitsio-devel graphviz-devel \
avahi-compat-libdns_sd-devel libldap-dev python-devel \
libxml2-devel gsl-static gsl-devel \
libAfterImage libAfterImage-devel

sudo python3 -m pip install numpy

# clone the repository
git clone http://github.com/root-project/root.git

# choose a build directory
mkdir build_root; cd build_root

scl enable devtoolset-8 bash

# configure: choose install target, on the lab machine we need to disable asimage for some reason
# the important flag is the C++ standard
cmake3 -DCMAKE_INSTALL_PREFIX=/opt/root -DCMAKE_CXX_STANDARD=17 -DPYTHON_EXECUTABLE=/usr/bin/python3 ../

#build and install
sudo cmake3 --build . --target install -- -j4

</syntaxhighlight>

Building ROOT

2020-02-17T12:43:14Z

Ogr043:

[[Main Page]] -> [[Control & Readout Software Documentation and Howto's]] -> [[Building ROOT]]

In the pCT project we need to use a version of ROOT which is compiled with c++17 in order to build packages with ROOT dependencies with c++17 standard. .

ROOT implements a custom adaptor to <code>std::string_view</code> if not compiled with c++17 and this conflicts with the real one if a packages uses c++17 standard and ROOT libraries/includes.

<syntaxhighlight lang="bash">
sudo yum install git cmake gcc-c++ gcc binutils \
libX11-devel libXpm-devel libXft-devel libXext-devel \
gcc-gfortran openssl-devel pcre-devel \
mesa-libGL-devel mesa-libGLU-devel glew-devel ftgl-devel mysql-devel \
fftw-devel cfitsio-devel graphviz-devel \
avahi-compat-libdns_sd-devel libldap-dev python-devel \
libxml2-devel gsl-static gsl-devel \
libAfterImage libAfterImage-devel

sudo python3 -m pip install numpy

# clone the repository
git clone http://github.com/root-project/root.git

# choose a build directory
mkdir build_root; cd build_root

scl enable devtoolset-8 bash

# configure: choose install target, on the lab machine we need to disable asimage for some reason
# the important flag is the C++ standard
cmake3 -DCMAKE_INSTALL_PREFIX=/opt/root -DCMAKE_CXX_STANDARD=17 DPYTHON_EXECUTABLE=/usr/bin/python3 ../

#build and install
sudo cmake3 --build . --target install -- -j4

</syntaxhighlight>

File:PRU Address Map.pdf

2020-02-10T13:39:49Z

Ogr043: Ogr043 uploaded a new version of File:PRU Address Map.pdf

File:Trigger manager.pdf

2020-02-10T13:38:13Z

Ogr043: Ogr043 uploaded a new version of File:Trigger manager.pdf

File:Ptb regs.pdf

2020-02-10T13:37:50Z

Ogr043: Ogr043 uploaded a new version of File:Ptb regs.pdf

File:Power control.pdf

2020-02-10T13:37:32Z

Ogr043: Ogr043 uploaded a new version of File:Power control.pdf

File:Offload.pdf

2020-02-10T13:36:42Z

Ogr043: Ogr043 uploaded a new version of File:Offload.pdf

File:Global regs.pdf

2020-02-10T13:36:25Z

Ogr043: Ogr043 uploaded a new version of File:Global regs.pdf

File:Alpide data.pdf

2020-02-10T13:35:50Z

Ogr043: Ogr043 uploaded a new version of File:Alpide data.pdf