Documentation: Difference between revisions
→Creating a project fork: moved to GitLab developer AQ |
→Pull/Merge request: moved to GitLab developer FAQ |
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Or using the direct link | Or using the direct link | ||
git push https://user@gitlab.uib.no/user/wpn.git dev | git push https://user@gitlab.uib.no/user/wpn.git dev | ||
=== Importing an external package === | === Importing an external package === |
Revision as of 10:10, 10 February 2021
Mailing lists and collaborative tools
- Project web page: has to come
- General mailing list: pCT@uib.no
- Slack project
Software installation
- Software tutorial at IFT
- ROOT installation
- Geant 4 installation
- Gate installation
- FLUKA installation
- Insight Toolkit (ITK) installation
- Reconstruction Toolkit (RTK) installation
- DTC Toolkit for reconstruction
- User guide and tutorial
- https://github.com/HelgeEgil/focal (to be merged into gitlab)
- Cluster convolution for GATE
- Visualization Toolkit (VTK) Installation and usage
Software repository
We use the gitlab server hosted by IT of University of Bergen.
Get access to the repositories - with UiB account
Open the UiB gitlab web interface.
Log in with your UiB account, then the administrators will give you access to the pCT group. Since authentication goes via Dataporten service, accounts from other Norwegian universities or institutions can be used in the same way.
Get access to the repositories - without UiB account
It is possible to use a github user account to login to the UiB gitlab, however such external users are not allowed to create forks in the gitlab domain. Since forks are mandatory for the development cycle, github logins can effectively only be used for read access. Again the repository administrators need to add you to the pCT group.
Guest accounts for external developers can be set up, get in contact with the group over the general channels
Further information:
GitLab best practice
GitLab Developer FAQ
Gitlab Master FAQ
Development workflow
Every logged-in user can access the main repository, however only a small group of administrators has write access. To contribute, a user creates a fork (see here) from the repository. This is a repository copy in the Gitlab system where a single developer or a group of developers have full access.
A local copy of the repository is required on the working machine in order to work on the project. This copy is referred to be a clone (see here).
Making local working copy
A project is utilized through a local working copy referred to be a clone. The project can be cloned from either the main repository in the group space or the fork in the user space depending on the role.
In the examples replace user and wpn (e.g. wp7) appropriately.
Note: the gitlab offers two modes for the link to be cloned, you can choose ssh (default setting) or https. If you can not clone with the proposed default link, try option https://.
From the main repository
The main repository is cloned like
git clone https://gitlab.uib.no/pct/wpn.git
The upstream link can be changed later to any other repository like e.g. a development fork as follows (given the clone directory is the current working directory)
git remote set-url origin https://user@gitlab.uib.no/user/wpn.git
The originally cloned remote repository will get the identifier origin in your local clone.
From development fork
Clone directly from your development fork
git clone https://user@gitlab.uib.no/user/wpn.git
This will create a local directory wpn, an optional argument after the link allows to change the directory name, e.g.
git clone https://user@gitlab.uib.no/user/wpn.git mywork
Multiple upstream repositories
As a more advanced option, multiple remote repositories can be added to the clone. All remote repositories are referenced through their identifiers, e.g. origin pointing to the fork and pctgroup pointing to main repository (chosen as an example).
git remote add pctgroup https://gitlab.uib.no/pct/wpn.git
Check configured upstream repositories
The configured upstream repositories can be checked with
git remote -v
This will display the identifier and link to the configured upstream repositories.
Pushing to development fork
Once you have added commits to e.g. the dev branch, those commits can be pushed upstream to the fork (if origin refers to the fork)
git push origin dev
Or using the direct link
git push https://user@gitlab.uib.no/user/wpn.git dev
Importing an external package
The project will use a couple of external packages which are hosted in a different master repository. Copies of such external packages can be added to the gitlab server under our project group to provide a consistent package.
Here is a proposed workflow for importing a package which is already hosted in git.
- Create new repository in the pCT group or ask for creation, lets call it newPackage
- Fork the repository to your user space
- Clone the package you want to import
git clone <some_external_link> newPackage # we give it the new name
cd newPackage
- Redirect upstream URL to the fork in your gitlab user space
git remote set-url origin https://user@gitlab.uib.no/user/newPackage.git
- Now make a forced push (option -f) to import the repository to your fork
git push -f origin
- Create merge request to branch import (if not existing, master or any other appropriate branch) by following the instructions Pull/Merge request