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'''Wiki for the proton CT project'''
== Documentation and Howto's ==
=== Software ===
* [[Documentation|Software Documentation]] on how to install and use the involved software packages, how to use the GitLab service, and about the development workflow, etc.
=== Hardware ===
* [[Hardware Documentation and Howto's]] on pReadout, ALPIDE bonding, Production Test Box, Transition Card
=== Control & Readout Software ===
* [[Control & Readout Software Documentation and Howto's]]
=== ALPIDE ===
* [[ALPIDE Documentation and Papers]]
=== Cooling ===
[[Cooling Documentation]] on the cooling simulations, measurements, laboratory setup and the final design.
=== Århus Testbeam 2023 ===
[[Århus Testbeam 2023 Documentation]] on the testbeam at Århus hospital including simulation, setup, equipment used, etc.
== [[Publications]] ==
List of publications from the project.
==== Workpackage Reports ====
* [[Media:pCT-WP1-1-Rev2 design recommendations.pdf | pCT-WP1-01-Rev2 Detector design specifications]] (Rev2: Added carrier board thickness recommendations) --- See also submitted article on design optimization
* [[:File:pCT-WP1-02-Rev3 (Radiation environment and electronics).pdf | pCT-WP1-02-Rev3 Radiation environment and placement of electronics]] (Rev2: Updated results and assumptions, Rev3: Updated with 1-10cm results) (Please feel free to contact [mailto:jars@hvl.no Jarle Rambo Sølie] if there are any questions regarding the contents of this document.
==== Theses ====
==== Theses ====
* Daniel Aadnevik - MSc - 2014 - Extremely high-granularity digital tracking calorimeter for the detection of scattered protons in pCT
* Daniel Aadnevik - MSc - 2014 - Extremely high-granularity digital tracking calorimeter for the detection of scattered protons in pCT
Line 21: Line 49:
* [https://bora.uib.no/bora-xmlui/handle/11250/3076410 Alfred Abbasi - MSc (UiB) - 2023 Hardware and Software Studies for the Alignment of the Proton CT.]
* [https://bora.uib.no/bora-xmlui/handle/11250/3076410 Alfred Abbasi - MSc (UiB) - 2023 Hardware and Software Studies for the Alignment of the Proton CT.]
* [https://bora.uib.no/bora-xmlui/handle/11250/3072130 Jakub Bieniek - MSc (UiB) - 2023 Commisioning of the Cooling System for the Bergen Proton Computed Tomography Digital Tracking Calorimeter.]
* [https://bora.uib.no/bora-xmlui/handle/11250/3072130 Jakub Bieniek - MSc (UiB) - 2023 Commisioning of the Cooling System for the Bergen Proton Computed Tomography Digital Tracking Calorimeter.]
==== Journal Articles ====
* Aehle, M.,  et al. <b>Exploration of differentiability in a proton computed tomography simulation framework</b> <i> Physics in Medicine and Biology</i>  2023;68(244002).
** UiB archive: [ http://hdl.handle.net/10852/106386 ]
** IOP Science link: [https://iopscience.iop.org/article/10.1088/1361-6560/ad0bdd doi:10.1088/1361-6560/ad0bdd]
* Schilling, A.,  et al. <b>Towards Neural Charged Particle Tracking in Digital Tracking Calorimeters With Reinforcement Learning</b> <i>Physics in Medicine and Biology</i>  2023;68(194001).
** UiB archive: [ https://hdl.handle.net/11250/3100524 ]
** IOP Science link: [https://iopscience.iop.org/article/10.1088/1361-6560/acf5c2 doi:10.1109/TPAMI.2023.3305027]</b>
* Kortus, T.,  et al. <b>Towards Neural Charged Particle Tracking in Digital Tracking Calorimeters With Reinforcement Learning</b> <i>IEEE Transactions on Pattern Analysis and Machine Intelligence</i>  2023;45(15820).
** UiB archive: [ http://hdl.handle.net/10852/106386 ]
** IEEE link: [https://ieeexplore.ieee.org/document/10219056 doi:10.1088/1361-6560/acf5c2]
* Alme, J., Barnaföldi, G.G., Barthel, R., Borshchov, V., Bodova, T., van den Brink, A., et al. <b>A High-Granularity Digital Tracking Calorimeter Optimized for Proton CT. </b> <i>Frontiers in Physics.</i>  2020;8(460).
** Published manuscript: [[Media:10.3389_fphy.2020.568243.pdf | PDF]]
** Frontiers link: [https://www.frontiersin.org/article/10.3389/fphy.2020.568243 doi:10.3389/fphy.2020.568243]
* Pettersen, H.E.S., Volz, L., Sølie, J. R., Alme, J., Barnaföldi, G.G., Barthel, R. et al. <b>Helium Radiography with a Digital Tracking Calorimeter-a Monte Carlo Study for Secondary Track Rejection. </b> <i> Phys. Med. Biol.</i> 2021;66(3):035004.
** Published manuscript: [[Media: Pettersen_2021_Phys._Med._Biol._66_035004.pdf | PDF]]
** IOP Science link: [https://iopscience.iop.org/article/10.1088/1361-6560/abca03 doi:10.1088/1361-6560/abca03]
* Sølie, J.R., Volz, L., Pettersen H.E.S., Piersimoni, P., Odland, O.H., Röhrich, D., et al. <b>Image quality of list-mode proton imaging without front trackers. </b> <i> Phys. Med. Biol.</i> 2020;65(13):135012.
** Published manuscript: [[Media: 10.1088_1361-6560_ab8.pdf | PDF]]
** IOP Science link: [https://iopscience.iop.org/article/10.1088/1361-6560/ab8ddb doi:10.1088/1361-6560/ab8ddb]
* Tambave, G., Alme, J., Barnaföldi, G.G., Barthel, R., Van Den Brink, A., Brons, S., et al.<b> Characterization of monolithic CMOS pixel sensor chip with ion beams for application in particle computed tomography. </b> <i> Nuclear Instruments and Methods in Physics Research Section A</i> 2020;958:162626.
** Published manuscript: [[Media: Tambave-2020-Characterization-of-monolithic-cm.pdf| PDF]]
** Elsevier link: [https://www.sciencedirect.com/science/article/pii/S0168900219311258?via%3Dihub doi:10.1016/j.nima.2019.162626]
* Pettersen, Helge Egil Seime, Johan Alme, Gergely Gabor Barnafoldi, Alba Garcıa-Santos, Ola Grøttvik, Håvard Helstrup, Kristin Fanebust Hetland, Ilker Meric, Odd Harald Odland, Gabor Papp, Thomas Peitzmann, Dieter Röhrich, Joao Seco, Hesam Shafiee, Eivind Vågslid Skjæveland, Ganesh Tambave, Kjetil Ullaland, Monika Varga-Kofarago, Lennart Volz, Boris Wagner and Shiming Yang. <b>Design Optimization of a Pixel Based Range Telescope for Proton Computed Tomography.</b> <i>Physica Medica Special Issue: Advances in Geant4 for medicine.</i> 2019; 63:87-97
** Published manuscript: [[Media: Pettersen et al. - Design Optimization of a Pixel Based Range Telesco.pdf| PDF]]
** Elsevier link: [https://www.sciencedirect.com/science/article/abs/pii/S1120179719301358 doi:10.1016/J.ejmp.2019.05.026 ]
* Pettersen, H.E.S., J. Alme, A. van den Brink, M. Chaar, D. Fehlker, I. Meric, O.H. Odland, et al. <b>Proton Tracking in a High-Granularity Digital Tracking Calorimeter for Proton CT Purposes</b>.  <i>Nuclear Instruments and Methods in Physics Research A 860C, 51–61. doi:10.1016/j.nima.2017.02.007.</i>
** Published manuscript: [[Media: 1-s2.0-S0168900217301882-main.pdf | PDF]]
** Elsevier link: [http://www.sciencedirect.com/science/article/pii/S0168900217301882 doi:10.1016/j.nima.2017.02.007]
** arXiv link: [https://arxiv.org/abs/1611.02031 arXiv:1611.02031]
* Pettersen, H.E.S., Chaar, M., Meric, I., Odland, O.H., Sølie, J., Röhrich, D. <b>Accuracy of parameterized proton range models; a comparison</b>. <i>Radiation Physics and Chemistry, 144 (C): 295-297 (2018). doi:10.1016/j.radphyschem.2017.08.02</i>
** Published manuscript: [[Media: Comparison of different calculation methods of proton ranges.pdf | PDF]]
** Elsevier link: [http://www.sciencedirect.com/science/article/pii/S0969806X17303869?via%3Dihub 10.1016/j.radphyschem.2017.08.028]
** arXiv link: [https://arxiv.org/abs/1704.08854  arXiv:1704.08854]
* Pettersen, H. E. S., and D. Röhrich. 2017. <b>Kreftbehandling Med Protonterapi Og Proton CT.</b> <i>Fra Fysikkens Verden, December 2017.</i>
** Published article: [[Media: FFV-proton-CT-ensidig.pdf | PDF]]
** [http://norskfysisk.no/filer/FFV/2017/FFV-2017-4.pdf Magazine at norskfysisk.no]
==== Submitted ====
* Pettersen, H.E.S., Meric, I., Odland, O.H., Shafiee, H., Sølie, J., Röhrich, D. <b>Proton Tracking Algorithm for Pixel Based Range Telescopes for Proton Computed Tomography</b>. <i>Revision submitted to Web of Conferences after the "Connecting the Dots" conference.</i>
** Revised manuscript: [[Media: detector-proton-tracking.pdf | PDF]]
* Pettersen, Helge Egil Seime, Lennart Volz, Jarle Sølie, Dieter Rohrich, and Joao Seco. <b>A Linear Projection Model to Estimate a Proton’s Position in a Pencil Beam For Single Sided Proton Imaging,</b>. <i>Submitted to Physics in Medicine and Biology.</i>
** Submitted manuscript: [[Media: Authors manuscript.pdf | PDF]]
* Eikeland, Viljar Nilsen et al. <b> Bergen Proton CT System. </b> <i> Submitted as proceedings for the 12th Position Sensitive Detectors conference. </i>
** Submitted manuscript: [[Media: psd_proceedings.pdf | PDF]]
==== Posters ====
* Eikeland, Viljar Nilsen. <b> Bergen proton CT system. </b> <i> Presented at the 12th Position Sensitive Detectors conference.</i>
** Submitted poster [[Media: poster_PSD12.pdf | PDF]]
== Meetings ==
Hosted on Indico  https://indico.cern.ch/category/13882.
The old pages on the wiki can be found here: [[Meetings]]
Slides from the project [[Workshops | workshops in 2016]]
== [[Commissioning]] ==
Planning and information on [[Commissioning | commissioning, beam tests, etc]].
== [[Workpackages]] ==
Sections for the different [[Workpackages | work packages]]
== [[People]] ==
Contact info of involved people
== [[Links]] ==
Link collection of topics regarding the project
== Getting started ==
* Note: ASK is a placeholder that marks questions
* Note: Search function is not ideal. It doesn't find all occurences of the search term, e.g. aries finds libraries but not aries.bccs
* Consult the [//meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.
* [//www.mediawiki.org/wiki/Manual:Configuration_settings Configuration settings list]
* [//www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ]
* [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]

Revision as of 09:31, 8 February 2024

Wiki for the proton CT project

Documentation and Howto's

Software

  • Software Documentation on how to install and use the involved software packages, how to use the GitLab service, and about the development workflow, etc.

Hardware

Control & Readout Software

ALPIDE

Cooling

Cooling Documentation on the cooling simulations, measurements, laboratory setup and the final design.

Århus Testbeam 2023

Århus Testbeam 2023 Documentation on the testbeam at Århus hospital including simulation, setup, equipment used, etc.

Publications

List of publications from the project.

Workpackage Reports

Theses

Journal Articles

  • Alme, J., Barnaföldi, G.G., Barthel, R., Borshchov, V., Bodova, T., van den Brink, A., et al. A High-Granularity Digital Tracking Calorimeter Optimized for Proton CT. Frontiers in Physics. 2020;8(460).
  • Pettersen, H.E.S., Volz, L., Sølie, J. R., Alme, J., Barnaföldi, G.G., Barthel, R. et al. Helium Radiography with a Digital Tracking Calorimeter-a Monte Carlo Study for Secondary Track Rejection. Phys. Med. Biol. 2021;66(3):035004.
  • Sølie, J.R., Volz, L., Pettersen H.E.S., Piersimoni, P., Odland, O.H., Röhrich, D., et al. Image quality of list-mode proton imaging without front trackers. Phys. Med. Biol. 2020;65(13):135012.
  • Tambave, G., Alme, J., Barnaföldi, G.G., Barthel, R., Van Den Brink, A., Brons, S., et al. Characterization of monolithic CMOS pixel sensor chip with ion beams for application in particle computed tomography. Nuclear Instruments and Methods in Physics Research Section A 2020;958:162626.
  • Pettersen, Helge Egil Seime, Johan Alme, Gergely Gabor Barnafoldi, Alba Garcıa-Santos, Ola Grøttvik, Håvard Helstrup, Kristin Fanebust Hetland, Ilker Meric, Odd Harald Odland, Gabor Papp, Thomas Peitzmann, Dieter Röhrich, Joao Seco, Hesam Shafiee, Eivind Vågslid Skjæveland, Ganesh Tambave, Kjetil Ullaland, Monika Varga-Kofarago, Lennart Volz, Boris Wagner and Shiming Yang. Design Optimization of a Pixel Based Range Telescope for Proton Computed Tomography. Physica Medica Special Issue: Advances in Geant4 for medicine. 2019; 63:87-97
  • Pettersen, H.E.S., J. Alme, A. van den Brink, M. Chaar, D. Fehlker, I. Meric, O.H. Odland, et al. Proton Tracking in a High-Granularity Digital Tracking Calorimeter for Proton CT Purposes. Nuclear Instruments and Methods in Physics Research A 860C, 51–61. doi:10.1016/j.nima.2017.02.007.
  • Pettersen, H.E.S., Chaar, M., Meric, I., Odland, O.H., Sølie, J., Röhrich, D. Accuracy of parameterized proton range models; a comparison. Radiation Physics and Chemistry, 144 (C): 295-297 (2018). doi:10.1016/j.radphyschem.2017.08.02
  • Pettersen, H. E. S., and D. Röhrich. 2017. Kreftbehandling Med Protonterapi Og Proton CT. Fra Fysikkens Verden, December 2017.

Submitted

  • Pettersen, H.E.S., Meric, I., Odland, O.H., Shafiee, H., Sølie, J., Röhrich, D. Proton Tracking Algorithm for Pixel Based Range Telescopes for Proton Computed Tomography. Revision submitted to Web of Conferences after the "Connecting the Dots" conference.
    • Revised manuscript: PDF
  • Pettersen, Helge Egil Seime, Lennart Volz, Jarle Sølie, Dieter Rohrich, and Joao Seco. A Linear Projection Model to Estimate a Proton’s Position in a Pencil Beam For Single Sided Proton Imaging,. Submitted to Physics in Medicine and Biology.
    • Submitted manuscript: PDF
  • Eikeland, Viljar Nilsen et al. Bergen Proton CT System. Submitted as proceedings for the 12th Position Sensitive Detectors conference.
    • Submitted manuscript: PDF

Posters

  • Eikeland, Viljar Nilsen. Bergen proton CT system. Presented at the 12th Position Sensitive Detectors conference.
    • Submitted poster PDF


Meetings

Hosted on Indico https://indico.cern.ch/category/13882.

The old pages on the wiki can be found here: Meetings

Slides from the project workshops in 2016

Commissioning

Planning and information on commissioning, beam tests, etc.

Workpackages

Sections for the different work packages

People

Contact info of involved people

Links

Link collection of topics regarding the project

Getting started

  • Note: ASK is a placeholder that marks questions
  • Note: Search function is not ideal. It doesn't find all occurences of the search term, e.g. aries finds libraries but not aries.bccs
Retrieved from "https://pct.wiki.uib.no/index.php?title=Main_Page&oldid=1013"